PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7650_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 372aa    MW: 41398.8 Da    PI: 4.744
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7650_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.5e-20112162256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 +y+G+r+++ +g+W+AeIrdp++    +r +lg+f+taeeAa+a++aa+++++g+
  RrC7650_p1 112 QYRGIRQRP-WGKWAAEIRDPRK---GAREWLGTFDTAEEAARAYDAAARRIRGN 162
                 69*******.**********954...3*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.1E-38112175IPR001471AP2/ERF domain
PROSITE profilePS5103224.553112169IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-22112170IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.6E-32112170IPR001471AP2/ERF domain
CDDcd000186.87E-17112170No hitNo description
PfamPF008476.4E-13113161IPR001471AP2/ERF domain
PRINTSPR003673.6E-11113124IPR001471AP2/ERF domain
PRINTSPR003673.6E-11135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MCGGAIISDF IPPPRSRRVT SEFIWPDLKK KGKASKKKRS DFLDLEDEFE ADFQGFKDDS  60
SFHCEEEDEF DVDDDDDVFA DVKPFVFTAG PVSGIESGGQ AEKCAKRKRK NQYRGIRQRP  120
WGKWAAEIRD PRKGAREWLG TFDTAEEAAR AYDAAARRIR GNKAKVNFPE EMVPSKRPAA  180
KTSNLKKPVA KQNQNPTLVQ QPTHVSQFCN NSFSDVSFTE AKPQMFNNQF FDVGGNNGYQ  240
YFSSDQGSNS LDCSEFGWSE HGPKTPEISS MLVNNNQAPF IEETNAAKKL KTNSGDGISN  300
NDGSDDLMAY LNNALWESPL EVEAMLGADA ATMTQEEANP MDLWSLDDIN SMLDGGGFAV  360
GGNAYHPRKC LF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-22112169260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3525205e-67AK352520.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-01-B04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013736413.10.0PREDICTED: ethylene-responsive transcription factor RAP2-2-like
SwissprotQ9LUM41e-168RAP22_ARATH; Ethylene-responsive transcription factor RAP2-2
TrEMBLR0G5V10.0R0G5V1_9BRAS; Uncharacterized protein
STRINGBra027355.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.31e-149related to AP2 2